J4_5LZY_015
3D structure
- PDB id
- 5LZY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.99 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 5LZY|1|9|A|672, 5LZY|1|9|A|1083, 5LZY|1|9|C|1085, 5LZY|1|9|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5LZY_015 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.0737
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
5LZY|1|9|A|671
5LZY|1|9|A|672
5LZY|1|9|G|673
*
5LZY|1|9|C|1032
5LZY|1|9|G|1033
5LZY|1|9|A|1034
5LZY|1|9|A|1035
5LZY|1|9|A|1036
5LZY|1|9|G|1037
*
5LZY|1|9|C|1078
5LZY|1|9|C|1079
5LZY|1|9|A|1080
5LZY|1|9|U|1081
5LZY|1|9|A|1082
5LZY|1|9|A|1083
5LZY|1|9|A|1084
5LZY|1|9|C|1085
5LZY|1|9|G|1086
5LZY|1|9|A|1087
5LZY|1|9|U|1088
5LZY|1|9|G|1089
*
5LZY|1|9|U|1160
5LZY|1|9|U|1161
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LL
- uS17
- Chain NN
- uS15
- Chain OO
- uS11
- Chain WW
- uS8
- Chain XX
- uS12
- Chain aa
- eS26
- Chain n
- eL41
- Chain p
- eL43
Coloring options: