J4_5MC6_014
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 5MC6|1|2|A|359
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5MC6_014 not in the Motif Atlas
- Homologous match to J4_8CRE_021
- Geometric discrepancy: 0.4358
- The information below is about J4_8CRE_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5MC6|1|2|C|99
5MC6|1|2|A|100
5MC6|1|2|U|101
5MC6|1|2|U|102
5MC6|1|2|A|103
5MC6|1|2|A|104
5MC6|1|2|A|105
5MC6|1|2|U|106
5MC6|1|2|C|107
*
5MC6|1|2|G|307
5MC6|1|2|C|308
5MC6|1|2|C|309
*
5MC6|1|2|G|357
5MC6|1|2|U|358
5MC6|1|2|A|359
5MC6|1|2|A|360
5MC6|1|2|C|361
*
5MC6|1|2|G|383
5MC6|1|2|G|384
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain S
- 40S ribosomal protein S4-A
- Chain V
- 40S ribosomal protein S8-A
- Chain X
- 40S ribosomal protein S11-A
- Chain c
- 40S ribosomal protein S23-A
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