J4_5MMI_005
3D structure
- PDB id
- 5MMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the large subunit of the chloroplast ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGUUC*GGUGAG*CU*ACCUGUAC
- Length
- 21 nucleotides
- Bulged bases
- 5MMI|1|A|G|1362
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5MMI_005 not in the Motif Atlas
- Homologous match to J4_4WF9_005
- Geometric discrepancy: 0.1418
- The information below is about J4_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77353.1
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
5MMI|1|A|G|1331
5MMI|1|A|G|1332
5MMI|1|A|U|1333
5MMI|1|A|U|1334
5MMI|1|A|C|1335
*
5MMI|1|A|G|1359
5MMI|1|A|G|1360
5MMI|1|A|U|1361
5MMI|1|A|G|1362
5MMI|1|A|A|1363
5MMI|1|A|G|1364
*
5MMI|1|A|C|1425
5MMI|1|A|U|1426
*
5MMI|1|A|A|1633
5MMI|1|A|C|1634
5MMI|1|A|C|1635
5MMI|1|A|U|1636
5MMI|1|A|G|1637
5MMI|1|A|U|1638
5MMI|1|A|A|1639
5MMI|1|A|C|1640
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L34, chloroplastic
- Chain 6
- plastid ribosomal protein cL37, PSRP5
- Chain U
- 50S ribosomal protein L23, chloroplastic
Coloring options: