J4_5MMI_010
3D structure
- PDB id
- 5MMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the large subunit of the chloroplast ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAAAG*UUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 5MMI|1|A|A|2305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5MMI_010 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.1102
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
5MMI|1|A|C|2302
5MMI|1|A|A|2303
5MMI|1|A|A|2304
5MMI|1|A|A|2305
5MMI|1|A|G|2306
*
5MMI|1|A|U|2360
5MMI|1|A|U|2361
5MMI|1|A|G|2362
5MMI|1|A|A|2363
5MMI|1|A|C|2364
*
5MMI|1|A|G|2387
5MMI|1|A|G|2388
5MMI|1|A|G|2389
*
5MMI|1|A|C|2398
5MMI|1|A|G|2399
5MMI|1|A|G|2400
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L33, chloroplastic
- Chain 4
- 50S ribosomal protein L35, chloroplastic
- Chain P
- plastid ribosomal protein uL18c
- Chain X
- plastid ribosomal protein bL27c
Coloring options: