J4_5NDK_016
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- GAG*CAUGUG*CAAAG*CGC
- Length
- 17 nucleotides
- Bulged bases
- 5NDK|1|1G|A|849
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5NDK_016 not in the Motif Atlas
- Homologous match to J4_4LFB_002
- Geometric discrepancy: 0.1125
- The information below is about J4_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_88771.1
- Basepair signature
- cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW
- Number of instances in this motif group
- 1
Unit IDs
5NDK|1|1G|G|782
5NDK|1|1G|A|783
5NDK|1|1G|G|784
*
5NDK|1|1G|C|818
5NDK|1|1G|A|819
5NDK|1|1G|U|820
5NDK|1|1G|G|821
5NDK|1|1G|U|822
5NDK|1|1G|G|823
*
5NDK|1|1G|C|846
5NDK|1|1G|A|847
5NDK|1|1G|A|848
5NDK|1|1G|A|849
5NDK|1|1G|G|850
*
5NDK|1|1G|C|860
5NDK|1|1G|G|861
5NDK|1|1G|C|862
Current chains
- Chain 1G
- 16S ribosomal RNA
Nearby chains
- Chain BA
- 30S ribosomal protein S20
Coloring options: