J4_5NGM_001

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

5NGM|1|AA|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NGM_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1138

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5NGM|1|AA|C|271
5NGM|1|AA|C|272
*
5NGM|1|AA|G|416
5NGM|1|AA|A|417
5NGM|1|AA|G|418
5NGM|1|AA|U|419
5NGM|1|AA|A|420
5NGM|1|AA|C|421
*
5NGM|1|AA|G|445
5NGM|1|AA|G|446
5NGM|1|AA|A|447
5NGM|1|AA|A|448
5NGM|1|AA|U|449
5NGM|1|AA|C|450
5NGM|1|AA|U|451
5NGM|1|AA|G|452
*
5NGM|1|AA|U|467
5NGM|1|AA|A|468
5NGM|1|AA|A|469
5NGM|1|AA|G|470

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AV

50S ribosomal protein L28