J4_5NGM_005

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

5NGM|1|AA|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NGM_005 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.092

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5NGM|1|AA|G|1347
5NGM|1|AA|U|1348
5NGM|1|AA|U|1349
5NGM|1|AA|U|1350
5NGM|1|AA|C|1351
*
5NGM|1|AA|G|1375
5NGM|1|AA|G|1376
5NGM|1|AA|U|1377
5NGM|1|AA|U|1378
5NGM|1|AA|A|1379
5NGM|1|AA|G|1380
*
5NGM|1|AA|C|1441
5NGM|1|AA|C|1442
*
5NGM|1|AA|G|1641
5NGM|1|AA|C|1642
5NGM|1|AA|C|1643
5NGM|1|AA|C|1644
5NGM|1|AA|G|1645
5NGM|1|AA|U|1646
5NGM|1|AA|A|1647
5NGM|1|AA|C|1648

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L34

Chain AR

50S ribosomal protein L23