J4_5NGM_006
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GACUG*CACAG*UGAC*GUAAC
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5NGM_006 not in the Motif Atlas
- Homologous match to J4_5J7L_025
- Geometric discrepancy: 0.0824
- The information below is about J4_5J7L_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.5
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5NGM|1|AA|G|1799
5NGM|1|AA|A|1800
5NGM|1|AA|C|1801
5NGM|1|AA|U|1802
5NGM|1|AA|G|1803
*
5NGM|1|AA|C|1815
5NGM|1|AA|A|1816
5NGM|1|AA|C|1817
5NGM|1|AA|A|1818
5NGM|1|AA|G|1819
*
5NGM|1|AA|U|1854
5NGM|1|AA|G|1855
5NGM|1|AA|A|1856
5NGM|1|AA|C|1857
*
5NGM|1|AA|G|2002
5NGM|1|AA|U|2003
5NGM|1|AA|A|2004
5NGM|1|AA|A|2005
5NGM|1|AA|C|2006
Current chains
- Chain AA
- 23S Ribosomal RNA
Nearby chains
- Chain AC
- 50S ribosomal protein L2
Coloring options: