J4_5NJT_003
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 5NJT|1|A|G|585, 5NJT|1|A|A|824
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5NJT_003 not in the Motif Atlas
- Homologous match to J4_6CZR_013
- Geometric discrepancy: 0.1089
- The information below is about J4_6CZR_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.5
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5NJT|1|A|G|584
5NJT|1|A|G|585
5NJT|1|A|G|586
*
5NJT|1|A|C|773
5NJT|1|A|G|774
5NJT|1|A|A|775
5NJT|1|A|A|776
5NJT|1|A|A|777
5NJT|1|A|G|778
*
5NJT|1|A|C|819
5NJT|1|A|C|820
5NJT|1|A|G|821
5NJT|1|A|U|822
5NJT|1|A|A|823
5NJT|1|A|A|824
5NJT|1|A|A|825
5NJT|1|A|C|826
5NJT|1|A|G|827
5NJT|1|A|A|828
5NJT|1|A|U|829
5NJT|1|A|G|830
*
5NJT|1|A|C|889
5NJT|1|A|C|890
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain H
- 30S ribosomal protein S8
- Chain L
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
- Chain U
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: