J4_5NJT_004

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CC*GAGUAC*GGAAUCCG*CAAG

Length

20 nucleotides

Bulged bases

5NJT|1|U|C|452

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NJT_004 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.2006

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.2

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

11

Unit IDs

5NJT|1|U|C|271
5NJT|1|U|C|272
*
5NJT|1|U|G|417
5NJT|1|U|A|418
5NJT|1|U|G|419
5NJT|1|U|U|420
5NJT|1|U|A|421
5NJT|1|U|C|422
*
5NJT|1|U|G|446
5NJT|1|U|G|447
5NJT|1|U|A|448
5NJT|1|U|A|449
5NJT|1|U|U|450
5NJT|1|U|C|451
5NJT|1|U|C|452
5NJT|1|U|G|453
*
5NJT|1|U|C|468
5NJT|1|U|A|469
5NJT|1|U|A|470
5NJT|1|U|G|471

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain u

50S ribosomal protein L28