J4_5NJT_011

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GACUG*CACAG*UGAC*GCAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NJT_011 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.1126

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5NJT|1|U|G|1801
5NJT|1|U|A|1802
5NJT|1|U|C|1803
5NJT|1|U|U|1804
5NJT|1|U|G|1805
*
5NJT|1|U|C|1817
5NJT|1|U|A|1818
5NJT|1|U|C|1819
5NJT|1|U|A|1820
5NJT|1|U|G|1821
*
5NJT|1|U|U|1856
5NJT|1|U|G|1857
5NJT|1|U|A|1858
5NJT|1|U|C|1859
*
5NJT|1|U|G|2004
5NJT|1|U|C|2005
5NJT|1|U|A|2006
5NJT|1|U|A|2007
5NJT|1|U|C|2008

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain W

50S ribosomal protein L2