J4_5NJT_013
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAAAG*UUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 5NJT|1|U|A|2317
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5NJT_013 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.1389
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
5NJT|1|U|C|2314
5NJT|1|U|A|2315
5NJT|1|U|A|2316
5NJT|1|U|A|2317
5NJT|1|U|G|2318
*
5NJT|1|U|U|2372
5NJT|1|U|U|2373
5NJT|1|U|G|2374
5NJT|1|U|A|2375
5NJT|1|U|C|2376
*
5NJT|1|U|G|2399
5NJT|1|U|G|2400
5NJT|1|U|G|2401
*
5NJT|1|U|C|2410
5NJT|1|U|G|2411
5NJT|1|U|G|2412
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain o
- 50S ribosomal protein L27
- Chain q
- 50S ribosomal protein L33 1
- Chain s
- 50S ribosomal protein L35
Coloring options: