J4_5NRG_001

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

5NRG|1|X|C|450, 5NRG|1|X|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NRG_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1359

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5NRG|1|X|C|271
5NRG|1|X|C|272
*
5NRG|1|X|G|416
5NRG|1|X|A|417
5NRG|1|X|G|418
5NRG|1|X|U|419
5NRG|1|X|A|420
5NRG|1|X|C|421
*
5NRG|1|X|G|445
5NRG|1|X|G|446
5NRG|1|X|A|447
5NRG|1|X|A|448
5NRG|1|X|U|449
5NRG|1|X|C|450
5NRG|1|X|U|451
5NRG|1|X|G|452
*
5NRG|1|X|U|467
5NRG|1|X|A|468
5NRG|1|X|A|469
5NRG|1|X|G|470

Current chains

Chain X

23S ribosomal RNA

Nearby chains