J4_5NRG_008

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

5NRG|1|X|A|2315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NRG_008 not in the Motif Atlas

Homologous match to J4_4WF9_008

Geometric discrepancy: 0.1232

The information below is about J4_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

5NRG|1|X|C|2312
5NRG|1|X|A|2313
5NRG|1|X|A|2314
5NRG|1|X|A|2315
5NRG|1|X|G|2316
*
5NRG|1|X|U|2370
5NRG|1|X|U|2371
5NRG|1|X|G|2372
5NRG|1|X|A|2373
5NRG|1|X|C|2374
*
5NRG|1|X|G|2397
5NRG|1|X|G|2398
5NRG|1|X|G|2399
*
5NRG|1|X|C|2408
5NRG|1|X|G|2409
5NRG|1|X|G|2410

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain D

50S ribosomal protein L5

Chain T

50S ribosomal protein L27