J4_5O60_007

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5O60_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0592

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5O60|1|A|G|1989
5O60|1|A|A|1990
5O60|1|A|C|1991
5O60|1|A|U|1992
5O60|1|A|G|1993
*
5O60|1|A|C|2005
5O60|1|A|A|2006
5O60|1|A|C|2007
5O60|1|A|A|2008
5O60|1|A|G|2009
*
5O60|1|A|U|2044
5O60|1|A|G|2045
5O60|1|A|A|2046
5O60|1|A|C|2047
*
5O60|1|A|G|2199
5O60|1|A|U|2200
5O60|1|A|A|2201
5O60|1|A|A|2202
5O60|1|A|C|2203

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2