J4_5O61_004

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GGUUC*GGUGAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

5O61|1|A|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5O61_004 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.1035

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5O61|1|A|G|1425
5O61|1|A|G|1426
5O61|1|A|U|1427
5O61|1|A|U|1428
5O61|1|A|C|1429
*
5O61|1|A|G|1453
5O61|1|A|G|1454
5O61|1|A|U|1455
5O61|1|A|G|1456
5O61|1|A|A|1457
5O61|1|A|G|1458
*
5O61|1|A|C|1519
5O61|1|A|C|1520
*
5O61|1|A|G|1815
5O61|1|A|C|1816
5O61|1|A|C|1817
5O61|1|A|C|1818
5O61|1|A|G|1819
5O61|1|A|U|1820
5O61|1|A|A|1821
5O61|1|A|C|1822

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23

Chain d

50S ribosomal protein L34