J4_5O61_004
3D structure
- PDB id
- 5O61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The complete structure of the Mycobacterium smegmatis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.31 Å
Loop
- Sequence
- GGUUC*GGUGAG*CC*GCCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 5O61|1|A|G|1456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5O61_004 not in the Motif Atlas
- Homologous match to J4_4WF9_005
- Geometric discrepancy: 0.1035
- The information below is about J4_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5O61|1|A|G|1425
5O61|1|A|G|1426
5O61|1|A|U|1427
5O61|1|A|U|1428
5O61|1|A|C|1429
*
5O61|1|A|G|1453
5O61|1|A|G|1454
5O61|1|A|U|1455
5O61|1|A|G|1456
5O61|1|A|A|1457
5O61|1|A|G|1458
*
5O61|1|A|C|1519
5O61|1|A|C|1520
*
5O61|1|A|G|1815
5O61|1|A|C|1816
5O61|1|A|C|1817
5O61|1|A|C|1818
5O61|1|A|G|1819
5O61|1|A|U|1820
5O61|1|A|A|1821
5O61|1|A|C|1822
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain U
- 50S ribosomal protein L23
- Chain d
- 50S ribosomal protein L34
Coloring options: