J4_5O61_007
3D structure
- PDB id
- 5O61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The complete structure of the Mycobacterium smegmatis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.31 Å
Loop
- Sequence
- GACUG*CACAG*UGAC*GUAAC
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5O61_007 not in the Motif Atlas
- Homologous match to J4_5J7L_025
- Geometric discrepancy: 0.0674
- The information below is about J4_5J7L_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.5
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5O61|1|A|G|1989
5O61|1|A|A|1990
5O61|1|A|C|1991
5O61|1|A|U|1992
5O61|1|A|G|1993
*
5O61|1|A|C|2005
5O61|1|A|A|2006
5O61|1|A|C|2007
5O61|1|A|A|2008
5O61|1|A|G|2009
*
5O61|1|A|U|2044
5O61|1|A|G|2045
5O61|1|A|A|2046
5O61|1|A|C|2047
*
5O61|1|A|G|2199
5O61|1|A|U|2200
5O61|1|A|A|2201
5O61|1|A|A|2202
5O61|1|A|C|2203
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain BA
- Small subunit ribosomal RNA; SSU rRNA
- Chain BB
- Conserved domain protein
- Chain C
- 50S ribosomal protein L2
Coloring options: