J4_5O61_007

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5O61_007 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0674

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5O61|1|A|G|1989
5O61|1|A|A|1990
5O61|1|A|C|1991
5O61|1|A|U|1992
5O61|1|A|G|1993
*
5O61|1|A|C|2005
5O61|1|A|A|2006
5O61|1|A|C|2007
5O61|1|A|A|2008
5O61|1|A|G|2009
*
5O61|1|A|U|2044
5O61|1|A|G|2045
5O61|1|A|A|2046
5O61|1|A|C|2047
*
5O61|1|A|G|2199
5O61|1|A|U|2200
5O61|1|A|A|2201
5O61|1|A|A|2202
5O61|1|A|C|2203

Current chains

Chain A

23S rRNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain BB

Conserved domain protein

Chain C

50S ribosomal protein L2