3D structure

PDB id
5O61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The complete structure of the Mycobacterium smegmatis 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.31 Å

Loop

Sequence
GACUG*CACAG*UGAC*GUAAC
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5O61_007 not in the Motif Atlas
Homologous match to J4_5J7L_025
Geometric discrepancy: 0.0674
The information below is about J4_5J7L_025
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61477.5
Basepair signature
cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Number of instances in this motif group
4

Unit IDs

5O61|1|A|G|1989
5O61|1|A|A|1990
5O61|1|A|C|1991
5O61|1|A|U|1992
5O61|1|A|G|1993
*
5O61|1|A|C|2005
5O61|1|A|A|2006
5O61|1|A|C|2007
5O61|1|A|A|2008
5O61|1|A|G|2009
*
5O61|1|A|U|2044
5O61|1|A|G|2045
5O61|1|A|A|2046
5O61|1|A|C|2047
*
5O61|1|A|G|2199
5O61|1|A|U|2200
5O61|1|A|A|2201
5O61|1|A|A|2202
5O61|1|A|C|2203

Current chains

Chain A
23S rRNA

Nearby chains

Chain BA
Small subunit ribosomal RNA; SSU rRNA
Chain BB
Conserved domain protein
Chain C
50S ribosomal protein L2

Coloring options:


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