J4_5OT7_014

3D structure

PDB id

5OT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation factor G-ribosome complex captures in the absence of inhibitors.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5OT7_014 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.1177

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5OT7|1|4|G|1772
5OT7|1|4|A|1773
5OT7|1|4|C|1774
5OT7|1|4|U|1775
5OT7|1|4|G|1776
*
5OT7|1|4|C|1788
5OT7|1|4|A|1789
5OT7|1|4|C|1790
5OT7|1|4|A|1791
5OT7|1|4|G|1792
*
5OT7|1|4|C|1827
5OT7|1|4|G|1828
5OT7|1|4|A|1829
5OT7|1|4|C|1830
*
5OT7|1|4|G|1975
5OT7|1|4|U|1976
5OT7|1|4|A|1977
5OT7|1|4|A|1978
5OT7|1|4|C|1979

Current chains

Chain 4

23S Ribosomal RNA

Nearby chains

Chain g

50S ribosomal protein L2