J4_5T2A_001
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUUACAUC*GCC*GAGC*GG
- Length
- 18 nucleotides
- Bulged bases
- 5T2A|1|2|C|102
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5T2A_001 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.3418
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5T2A|1|2|C|97
5T2A|1|2|A|98
5T2A|1|2|U|99
5T2A|1|2|U|100
5T2A|1|2|A|101
5T2A|1|2|C|102
5T2A|1|2|A|103
5T2A|1|2|U|104
5T2A|1|2|C|105
*
5T2A|1|2|G|351
5T2A|1|2|C|352
5T2A|1|2|C|353
*
5T2A|1|2|G|401
5T2A|1|2|A|402
5T2A|1|2|G|403
5T2A|1|2|C|404
*
5T2A|1|2|G|426
5T2A|1|2|G|427
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 1
- eS4
- Chain 5
- eS8
- Chain AE
- uS17
- Chain AS
- uS12
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