J4_5T2A_008
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUAAG*UUGAU*ACU*AAG
- Length
- 16 nucleotides
- Bulged bases
- 5T2A|1|B|A|1020
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5T2A_008 not in the Motif Atlas
- Homologous match to J4_8P9A_019
- Geometric discrepancy: 0.1989
- The information below is about J4_8P9A_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_59590.1
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-F-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
5T2A|1|B|C|1017
5T2A|1|B|U|1018
5T2A|1|B|A|1019
5T2A|1|B|A|1020
5T2A|1|B|G|1021
*
5T2A|1|B|U|1075
5T2A|1|B|U|1076
5T2A|1|B|G|1077
5T2A|1|B|A|1078
5T2A|1|B|U|1079
*
5T2A|1|B|A|1104
5T2A|1|B|C|1105
5T2A|1|B|U|1106
*
5T2A|1|B|A|1115
5T2A|1|B|A|1116
5T2A|1|B|G|1117
Current chains
- Chain B
- LSU-beta
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain S
- eL21
- Chain r
- eL42
- Chain s
- uL18
Coloring options: