J4_5TZS_001
3D structure
- PDB id
- 5TZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Architecture of the yeast small subunit processome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 5TZS|1|1|A|359
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5TZS_001 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.0477
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
5TZS|1|1|C|99
5TZS|1|1|A|100
5TZS|1|1|U|101
5TZS|1|1|U|102
5TZS|1|1|A|103
5TZS|1|1|A|104
5TZS|1|1|A|105
5TZS|1|1|U|106
5TZS|1|1|C|107
*
5TZS|1|1|G|307
5TZS|1|1|C|308
5TZS|1|1|C|309
*
5TZS|1|1|G|357
5TZS|1|1|U|358
5TZS|1|1|A|359
5TZS|1|1|A|360
5TZS|1|1|C|361
*
5TZS|1|1|G|383
5TZS|1|1|G|384
Current chains
- Chain 1
- 18S ribosomal RNA
Nearby chains
- Chain 5
- rpS4_ES4
- Chain 8
- rpS8_eS8
- Chain D
- rpS11_uS17
Coloring options: