J4_5UQ8_012

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5UQ8_012 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1664

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

5UQ8|1|a|G|142
5UQ8|1|a|A|143
5UQ8|1|a|G|144
*
5UQ8|1|a|C|178
5UQ8|1|a|A|179
5UQ8|1|a|U|180
5UQ8|1|a|G|181
5UQ8|1|a|U|182
5UQ8|1|a|G|183
*
5UQ8|1|a|C|194
5UQ8|1|a|A|195
5UQ8|1|a|A|196
5UQ8|1|a|A|197
5UQ8|1|a|G|198
*
5UQ8|1|a|C|219
5UQ8|1|a|G|220
5UQ8|1|a|C|221

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20