J4_5VYC_012
3D structure
- PDB id
- 5VYC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 5VYC|1|i3|A|672, 5VYC|1|i3|A|1083, 5VYC|1|i3|G|1086, 5VYC|1|i3|U|1088
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5VYC_012 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1105
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
5VYC|1|i3|A|671
5VYC|1|i3|A|672
5VYC|1|i3|G|673
*
5VYC|1|i3|C|1032
5VYC|1|i3|G|1033
5VYC|1|i3|A|1034
5VYC|1|i3|A|1035
5VYC|1|i3|A|1036
5VYC|1|i3|G|1037
*
5VYC|1|i3|C|1078
5VYC|1|i3|C|1079
5VYC|1|i3|A|1080
5VYC|1|i3|U|1081
5VYC|1|i3|A|1082
5VYC|1|i3|A|1083
5VYC|1|i3|A|1084
5VYC|1|i3|C|1085
5VYC|1|i3|G|1086
5VYC|1|i3|A|1087
5VYC|1|i3|U|1088
5VYC|1|i3|G|1089
*
5VYC|1|i3|U|1160
5VYC|1|i3|U|1161
Current chains
- Chain i3
- Human 18S ribosomal RNA
Nearby chains
- Chain L3
- 40S ribosomal protein S11
- Chain N3
- 40S ribosomal protein S13
- Chain O3
- 40S ribosomal protein S14
- Chain W3
- 40S ribosomal protein S15a
- Chain X3
- 40S ribosomal protein S23
- Chain a3
- 40S ribosomal protein S26
- Chain j3
- 60S ribosomal protein L41
- Chain k3
- Malignant T-cell-amplified sequence 1
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