J4_5ZLU_013

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

5ZLU|1|G|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5ZLU_013 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.2807

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

5ZLU|1|G|G|142
5ZLU|1|G|A|143
5ZLU|1|G|G|144
*
5ZLU|1|G|C|178
5ZLU|1|G|A|179
5ZLU|1|G|U|180
5ZLU|1|G|G|181
5ZLU|1|G|U|182
5ZLU|1|G|G|183
*
5ZLU|1|G|C|194
5ZLU|1|G|A|195
5ZLU|1|G|A|196
5ZLU|1|G|A|197
5ZLU|1|G|G|198
*
5ZLU|1|G|C|219
5ZLU|1|G|G|220
5ZLU|1|G|C|221

Current chains

Chain G

16S ribosomal RNA

Nearby chains

Chain C

30S ribosomal protein S20