J4_5ZLU_016

3D structure

PDB id

5ZLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome Structure bound to ABC-F protein.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGGUUC*GGUUAG*CU*ACCCGUACC

Length

23 nucleotides

Bulged bases

5ZLU|1|V|U|1313, 5ZLU|1|V|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5ZLU_016 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.5847

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5ZLU|1|V|G|1309
5ZLU|1|V|G|1310
5ZLU|1|V|G|1311
5ZLU|1|V|U|1312
5ZLU|1|V|U|1313
5ZLU|1|V|C|1314
*
5ZLU|1|V|G|1338
5ZLU|1|V|G|1339
5ZLU|1|V|U|1340
5ZLU|1|V|U|1341
5ZLU|1|V|A|1342
5ZLU|1|V|G|1343
*
5ZLU|1|V|C|1404
5ZLU|1|V|U|1405
*
5ZLU|1|V|A|1597
5ZLU|1|V|C|1598
5ZLU|1|V|C|1599
5ZLU|1|V|C|1600
5ZLU|1|V|G|1601
5ZLU|1|V|U|1602
5ZLU|1|V|A|1603
5ZLU|1|V|C|1604
5ZLU|1|V|C|1605

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain q

50S ribosomal protein L23

Chain z

50S ribosomal protein L34