J4_6AWC_003
3D structure
- PDB id
- 6AWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of 30S ribosomal subunit and RNA polymerase complex in rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.9 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6AWC_003 not in the Motif Atlas
- Homologous match to J4_6CZR_013
- Geometric discrepancy: 0.2755
- The information below is about J4_6CZR_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.5
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6AWC|1|A|G|575
6AWC|1|A|C|576
6AWC|1|A|G|577
*
6AWC|1|A|C|764
6AWC|1|A|G|765
6AWC|1|A|A|766
6AWC|1|A|A|767
6AWC|1|A|A|768
6AWC|1|A|G|769
*
6AWC|1|A|C|810
6AWC|1|A|C|811
6AWC|1|A|G|812
6AWC|1|A|U|813
6AWC|1|A|A|814
6AWC|1|A|A|815
6AWC|1|A|A|816
6AWC|1|A|C|817
6AWC|1|A|G|818
6AWC|1|A|A|819
6AWC|1|A|U|820
6AWC|1|A|G|821
*
6AWC|1|A|C|879
6AWC|1|A|C|880
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain K
- 30S ribosomal protein S8
- Chain O
- 30S ribosomal protein S12
- Chain R
- 30S ribosomal protein S15
- Chain T
- 30S ribosomal protein S17
- Chain X
- 30S ribosomal protein S21
Coloring options: