J4_6AZ1_001
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- C(A2M)UUACAUC*GCC*GAGC*GG
- Length
- 18 nucleotides
- Bulged bases
- 6AZ1|1|1|C|102
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6AZ1_001 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.3728
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6AZ1|1|1|C|97
6AZ1|1|1|A2M|98
6AZ1|1|1|U|99
6AZ1|1|1|U|100
6AZ1|1|1|A|101
6AZ1|1|1|C|102
6AZ1|1|1|A|103
6AZ1|1|1|U|104
6AZ1|1|1|C|105
*
6AZ1|1|1|G|351
6AZ1|1|1|C|352
6AZ1|1|1|C|353
*
6AZ1|1|1|G|401
6AZ1|1|1|A|402
6AZ1|1|1|G|403
6AZ1|1|1|C|404
*
6AZ1|1|1|G|426
6AZ1|1|1|G|427
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain E
- ribosomal protein S4e
- Chain K
- ribosomal protein S8e
- Chain P
- ribosomal protein S12
- Chain U
- ribosomal protein S17
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