J4_6B4V_002

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

6B4V|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6B4V_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1043

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6B4V|1|A|G|142
6B4V|1|A|A|143
6B4V|1|A|G|144
*
6B4V|1|A|C|178
6B4V|1|A|A|179
6B4V|1|A|U|180
6B4V|1|A|G|181
6B4V|1|A|U|182
6B4V|1|A|G|183
*
6B4V|1|A|C|194
6B4V|1|A|A|195
6B4V|1|A|A|196
6B4V|1|A|A|197
6B4V|1|A|G|198
*
6B4V|1|A|C|219
6B4V|1|A|G|220
6B4V|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain CB

30S ribosomal protein S20