J4_6B4V_025

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAAAG*CUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

6B4V|1|FB|A|2288, 6B4V|1|FB|G|2382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6B4V_025 not in the Motif Atlas

Homologous match to J4_4WF9_008

Geometric discrepancy: 0.1435

The information below is about J4_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

6B4V|1|FB|C|2285
6B4V|1|FB|A|2286
6B4V|1|FB|A|2287
6B4V|1|FB|A|2288
6B4V|1|FB|G|2289
*
6B4V|1|FB|C|2343
6B4V|1|FB|U|2344
6B4V|1|FB|G|2345
6B4V|1|FB|A|2346
6B4V|1|FB|C|2347
*
6B4V|1|FB|G|2370
6B4V|1|FB|G|2371
6B4V|1|FB|G|2372
*
6B4V|1|FB|C|2381
6B4V|1|FB|G|2382
6B4V|1|FB|G|2383

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L27

Chain HC

50S ribosomal protein L33

Chain JC

50S ribosomal protein L35