3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GAG*CAUGUG*CAAAG*CGC
Length
17 nucleotides
Bulged bases
6BOH|1|A|A|197
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6BOH_002 not in the Motif Atlas
Homologous match to J4_4LFB_002
Geometric discrepancy: 0.1034
The information below is about J4_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_88771.1
Basepair signature
cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW
Number of instances in this motif group
1

Unit IDs

6BOH|1|A|G|142
6BOH|1|A|A|143
6BOH|1|A|G|144
*
6BOH|1|A|C|178
6BOH|1|A|A|179
6BOH|1|A|U|180
6BOH|1|A|G|181
6BOH|1|A|U|182
6BOH|1|A|G|183
*
6BOH|1|A|C|194
6BOH|1|A|A|195
6BOH|1|A|A|196
6BOH|1|A|A|197
6BOH|1|A|G|198
*
6BOH|1|A|C|219
6BOH|1|A|G|220
6BOH|1|A|C|221

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain DB
30S ribosomal protein S20

Coloring options:


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