J4_6BOH_002

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

6BOH|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6BOH_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1034

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6BOH|1|A|G|142
6BOH|1|A|A|143
6BOH|1|A|G|144
*
6BOH|1|A|C|178
6BOH|1|A|A|179
6BOH|1|A|U|180
6BOH|1|A|G|181
6BOH|1|A|U|182
6BOH|1|A|G|183
*
6BOH|1|A|C|194
6BOH|1|A|A|195
6BOH|1|A|A|196
6BOH|1|A|A|197
6BOH|1|A|G|198
*
6BOH|1|A|C|219
6BOH|1|A|G|220
6BOH|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain DB

30S ribosomal protein S20