J4_6BOH_031
3D structure
- PDB id
- 6BOH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CAAAG*CUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 6BOH|1|B|A|2288, 6BOH|1|B|G|2382
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6BOH_031 not in the Motif Atlas
- Homologous match to J4_4WF9_008
- Geometric discrepancy: 0.14
- The information below is about J4_4WF9_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6BOH|1|B|C|2285
6BOH|1|B|A|2286
6BOH|1|B|A|2287
6BOH|1|B|A|2288
6BOH|1|B|G|2289
*
6BOH|1|B|C|2343
6BOH|1|B|U|2344
6BOH|1|B|G|2345
6BOH|1|B|A|2346
6BOH|1|B|C|2347
*
6BOH|1|B|G|2370
6BOH|1|B|G|2371
6BOH|1|B|G|2372
*
6BOH|1|B|C|2381
6BOH|1|B|G|2382
6BOH|1|B|G|2383
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain DA
- 50S ribosomal protein L33
- Chain FA
- 50S ribosomal protein L35
- Chain GB
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- 50S ribosomal protein L18
- Chain X
- 50S ribosomal protein L27
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