J4_6BY1_009
3D structure
- PDB id
- 6BY1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pH03H9 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.94 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 6BY1|1|BA|C|576, 6BY1|1|BA|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6BY1_009 not in the Motif Atlas
- Homologous match to J4_6CZR_013
- Geometric discrepancy: 0.1214
- The information below is about J4_6CZR_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.5
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6BY1|1|BA|G|575
6BY1|1|BA|C|576
6BY1|1|BA|G|577
*
6BY1|1|BA|C|764
6BY1|1|BA|G|765
6BY1|1|BA|A|766
6BY1|1|BA|A|767
6BY1|1|BA|A|768
6BY1|1|BA|G|769
*
6BY1|1|BA|C|810
6BY1|1|BA|C|811
6BY1|1|BA|G|812
6BY1|1|BA|U|813
6BY1|1|BA|A|814
6BY1|1|BA|A|815
6BY1|1|BA|A|816
6BY1|1|BA|C|817
6BY1|1|BA|G|818
6BY1|1|BA|A|819
6BY1|1|BA|U|820
6BY1|1|BA|G|821
*
6BY1|1|BA|C|879
6BY1|1|BA|C|880
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BH
- 30S ribosomal protein S8
- Chain BL
- 30S ribosomal protein S12
- Chain BO
- 30S ribosomal protein S15
- Chain BQ
- 30S ribosomal protein S17
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
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