J4_6DTI_002

3D structure

PDB id

6DTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

6DTI|1|A|A|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6DTI_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.0859

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

6DTI|1|A|G|136
6DTI|1|A|A|137
6DTI|1|A|G|138
*
6DTI|1|A|C|172
6DTI|1|A|A|173
6DTI|1|A|U|174
6DTI|1|A|G|175
6DTI|1|A|U|176
6DTI|1|A|G|177
*
6DTI|1|A|C|201
6DTI|1|A|A|202
6DTI|1|A|A|203
6DTI|1|A|A|204
6DTI|1|A|G|205
*
6DTI|1|A|C|215
6DTI|1|A|G|216
6DTI|1|A|C|217

Current chains

Chain A

16s rRNA

Nearby chains

Chain T

30S ribosomal protein S20