J4_6EK0_013
3D structure
- PDB id
- 6EK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution cryo-EM structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AAG*CGAAAG*CCA(PSU)AAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 6EK0|1|S2|A|672, 6EK0|1|S2|A|1083, 6EK0|1|S2|C|1085, 6EK0|1|S2|A|1087
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6EK0_013 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1414
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.2
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
6EK0|1|S2|A|671
6EK0|1|S2|A|672
6EK0|1|S2|G|673
*
6EK0|1|S2|C|1032
6EK0|1|S2|G|1033
6EK0|1|S2|A|1034
6EK0|1|S2|A|1035
6EK0|1|S2|A|1036
6EK0|1|S2|G|1037
*
6EK0|1|S2|C|1078
6EK0|1|S2|C|1079
6EK0|1|S2|A|1080
6EK0|1|S2|PSU|1081
6EK0|1|S2|A|1082
6EK0|1|S2|A|1083
6EK0|1|S2|A|1084
6EK0|1|S2|C|1085
6EK0|1|S2|G|1086
6EK0|1|S2|A|1087
6EK0|1|S2|U|1088
6EK0|1|S2|G|1089
*
6EK0|1|S2|U|1160
6EK0|1|S2|U|1161
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ln
- 60S ribosomal protein L41
- Chain Lp
- 60S ribosomal protein L37a
- Chain SL
- 40S ribosomal protein S11
- Chain SN
- 40S ribosomal protein S13
- Chain SO
- 40S ribosomal protein S14
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- 40S ribosomal protein S23
- Chain Sa
- 40S ribosomal protein S26
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