J4_6ERI_005

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUUC*GGUGAG*CU*ACCUGUAC

Length

21 nucleotides

Bulged bases

6ERI|1|AA|G|1362

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ERI_005 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.1238

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77353.1

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

6ERI|1|AA|G|1331
6ERI|1|AA|G|1332
6ERI|1|AA|U|1333
6ERI|1|AA|U|1334
6ERI|1|AA|C|1335
*
6ERI|1|AA|G|1359
6ERI|1|AA|G|1360
6ERI|1|AA|U|1361
6ERI|1|AA|G|1362
6ERI|1|AA|A|1363
6ERI|1|AA|G|1364
*
6ERI|1|AA|C|1425
6ERI|1|AA|U|1426
*
6ERI|1|AA|A|1633
6ERI|1|AA|C|1634
6ERI|1|AA|C|1635
6ERI|1|AA|U|1636
6ERI|1|AA|G|1637
6ERI|1|AA|U|1638
6ERI|1|AA|A|1639
6ERI|1|AA|C|1640

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AT

50S ribosomal protein L23, chloroplastic

Chain Ac

50S ribosomal protein L34, chloroplastic

Chain Aw

50S ribosomal protein 5 alpha, chloroplastic