J4_6ERI_008

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6ERI_008 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0761

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6ERI|1|AA|G|1782
6ERI|1|AA|A|1783
6ERI|1|AA|C|1784
6ERI|1|AA|U|1785
6ERI|1|AA|G|1786
*
6ERI|1|AA|C|1798
6ERI|1|AA|A|1799
6ERI|1|AA|C|1800
6ERI|1|AA|A|1801
6ERI|1|AA|G|1802
*
6ERI|1|AA|U|1837
6ERI|1|AA|G|1838
6ERI|1|AA|A|1839
6ERI|1|AA|C|1840
*
6ERI|1|AA|G|1989
6ERI|1|AA|U|1990
6ERI|1|AA|A|1991
6ERI|1|AA|A|1992
6ERI|1|AA|C|1993

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2, chloroplastic