J4_6ERI_010
3D structure
- PDB id
- 6ERI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CAAAG*UUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 6ERI|1|AA|A|2305, 6ERI|1|AA|G|2399
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6ERI_010 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.1501
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6ERI|1|AA|C|2302
6ERI|1|AA|A|2303
6ERI|1|AA|A|2304
6ERI|1|AA|A|2305
6ERI|1|AA|G|2306
*
6ERI|1|AA|U|2360
6ERI|1|AA|U|2361
6ERI|1|AA|G|2362
6ERI|1|AA|A|2363
6ERI|1|AA|C|2364
*
6ERI|1|AA|G|2387
6ERI|1|AA|G|2388
6ERI|1|AA|G|2389
*
6ERI|1|AA|C|2398
6ERI|1|AA|G|2399
6ERI|1|AA|G|2400
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AO
- 50S ribosomal protein L18, chloroplastic
- Chain AW
- 50S ribosomal protein L27, chloroplastic
- Chain Ab
- 50S ribosomal protein L33, chloroplastic
- Chain Ad
- 50S ribosomal protein L35, chloroplastic
Coloring options: