J4_6FEC_001
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUGAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 6FEC|1|A|G|397
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6FEC_001 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.328
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6FEC|1|A|C|98
6FEC|1|A|A|99
6FEC|1|A|U|100
6FEC|1|A|U|101
6FEC|1|A|A|102
6FEC|1|A|A|103
6FEC|1|A|A|104
6FEC|1|A|U|105
6FEC|1|A|C|106
*
6FEC|1|A|G|345
6FEC|1|A|C|346
6FEC|1|A|C|347
*
6FEC|1|A|G|395
6FEC|1|A|U|396
6FEC|1|A|G|397
6FEC|1|A|A|398
6FEC|1|A|C|399
*
6FEC|1|A|G|421
6FEC|1|A|G|422
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S11
- Chain I
- 40S ribosomal protein S4, X isoform
- Chain Q
- 40S ribosomal protein S23
- Chain o
- 40S ribosomal protein S8
Coloring options: