J4_6FTG_001
3D structure
- PDB id
- 6FTG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.1 Å
Loop
- Sequence
- CC*GAGUCG*CAAAGCG*UAAG
- Length
- 19 nucleotides
- Bulged bases
- 6FTG|1|u|C|309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6FTG_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.1274
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6FTG|1|u|C|111
6FTG|1|u|C|112
*
6FTG|1|u|G|278
6FTG|1|u|A|279
6FTG|1|u|G|280
6FTG|1|u|U|281
6FTG|1|u|C|282
6FTG|1|u|G|283
*
6FTG|1|u|C|304
6FTG|1|u|A|305
6FTG|1|u|A|306
6FTG|1|u|A|307
6FTG|1|u|G|308
6FTG|1|u|C|309
6FTG|1|u|G|310
*
6FTG|1|u|U|327
6FTG|1|u|A|328
6FTG|1|u|A|329
6FTG|1|u|G|330
Current chains
- Chain u
- 28S ribosomal RNA
Nearby chains
- Chain L
- eL13
- Chain N
- Ribosomal protein L15
- Chain h
- eL29
- Chain i
- 60S ribosomal protein L36
Coloring options: