J4_6FXC_016

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

6FXC|1|BA|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6FXC_016 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.092

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6FXC|1|BA|G|1347
6FXC|1|BA|U|1348
6FXC|1|BA|U|1349
6FXC|1|BA|U|1350
6FXC|1|BA|C|1351
*
6FXC|1|BA|G|1375
6FXC|1|BA|G|1376
6FXC|1|BA|U|1377
6FXC|1|BA|U|1378
6FXC|1|BA|A|1379
6FXC|1|BA|G|1380
*
6FXC|1|BA|C|1441
6FXC|1|BA|C|1442
*
6FXC|1|BA|G|1641
6FXC|1|BA|C|1642
6FXC|1|BA|C|1643
6FXC|1|BA|C|1644
6FXC|1|BA|G|1645
6FXC|1|BA|U|1646
6FXC|1|BA|A|1647
6FXC|1|BA|C|1648

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BR

50S ribosomal protein L23