J4_6FXC_017

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6FXC_017 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0824

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6FXC|1|BA|G|1799
6FXC|1|BA|A|1800
6FXC|1|BA|C|1801
6FXC|1|BA|U|1802
6FXC|1|BA|G|1803
*
6FXC|1|BA|C|1815
6FXC|1|BA|A|1816
6FXC|1|BA|C|1817
6FXC|1|BA|A|1818
6FXC|1|BA|G|1819
*
6FXC|1|BA|U|1854
6FXC|1|BA|G|1855
6FXC|1|BA|A|1856
6FXC|1|BA|C|1857
*
6FXC|1|BA|G|2002
6FXC|1|BA|U|2003
6FXC|1|BA|A|2004
6FXC|1|BA|A|2005
6FXC|1|BA|C|2006

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2