J4_6HA1_010
3D structure
- PDB id
- 6HA1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAAG*UUGAC*GGG*CGG
- Length
- 16 nucleotides
- Bulged bases
- 6HA1|1|A|A|2317
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6HA1_010 not in the Motif Atlas
- Homologous match to J4_9DFE_009
- Geometric discrepancy: 0.1044
- The information below is about J4_9DFE_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_98139.1
- Basepair signature
- cWW-F-cWW-tWW-tHH-cWW-cHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6HA1|1|A|C|2314
6HA1|1|A|A|2315
6HA1|1|A|A|2316
6HA1|1|A|A|2317
6HA1|1|A|G|2318
*
6HA1|1|A|U|2372
6HA1|1|A|U|2373
6HA1|1|A|G|2374
6HA1|1|A|A|2375
6HA1|1|A|C|2376
*
6HA1|1|A|G|2399
6HA1|1|A|G|2400
6HA1|1|A|G|2401
*
6HA1|1|A|C|2410
6HA1|1|A|G|2411
6HA1|1|A|G|2412
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L33 1
- Chain 3
- 50S ribosomal protein L35
- Chain W
- 50S ribosomal protein L27
Coloring options: