J4_6HMA_006

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6HMA_006 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0858

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6HMA|1|A|G|1799
6HMA|1|A|A|1800
6HMA|1|A|C|1801
6HMA|1|A|U|1802
6HMA|1|A|G|1803
*
6HMA|1|A|C|1815
6HMA|1|A|A|1816
6HMA|1|A|C|1817
6HMA|1|A|A|1818
6HMA|1|A|G|1819
*
6HMA|1|A|U|1854
6HMA|1|A|G|1855
6HMA|1|A|A|1856
6HMA|1|A|C|1857
*
6HMA|1|A|G|2002
6HMA|1|A|U|2003
6HMA|1|A|A|2004
6HMA|1|A|A|2005
6HMA|1|A|C|2006

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2