J4_6HMA_008

3D structure

PDB id

6HMA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Improved model derived from cryo-EM map of Staphylococcus aureus large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

6HMA|1|A|A|2315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6HMA_008 not in the Motif Atlas

Homologous match to J4_9DFE_009

Geometric discrepancy: 0.1747

The information below is about J4_9DFE_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

6HMA|1|A|C|2312
6HMA|1|A|A|2313
6HMA|1|A|A|2314
6HMA|1|A|A|2315
6HMA|1|A|G|2316
*
6HMA|1|A|U|2370
6HMA|1|A|U|2371
6HMA|1|A|G|2372
6HMA|1|A|A|2373
6HMA|1|A|C|2374
*
6HMA|1|A|G|2397
6HMA|1|A|G|2398
6HMA|1|A|G|2399
*
6HMA|1|A|C|2408
6HMA|1|A|G|2409
6HMA|1|A|G|2410

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L33

Chain 3

50S ribosomal protein L35

Chain U

50S ribosomal protein L27