J4_6HRM_011

3D structure

PDB id

6HRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S d2d8 stapled ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6HRM_011 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0588

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6HRM|1|1|A|3278
6HRM|1|1|A|3279
6HRM|1|1|C|3280
6HRM|1|1|U|3281
6HRM|1|1|G|3282
*
6HRM|1|1|C|3294
6HRM|1|1|A|3295
6HRM|1|1|C|3296
6HRM|1|1|A|3297
6HRM|1|1|G|3298
*
6HRM|1|1|U|3333
6HRM|1|1|G|3334
6HRM|1|1|A|3335
6HRM|1|1|C|3336
*
6HRM|1|1|G|3481
6HRM|1|1|U|3482
6HRM|1|1|A|3483
6HRM|1|1|A|3484
6HRM|1|1|U|3485

Current chains

Chain 1

stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA

Nearby chains

Chain B

50S ribosomal protein L2