J4_6HRM_013
3D structure
- PDB id
- 6HRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S d2d8 stapled ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CGAAG*UUGAC*GGU*AGG
- Length
- 16 nucleotides
- Bulged bases
- 6HRM|1|1|A|3794, 6HRM|1|1|G|3888
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6HRM_013 not in the Motif Atlas
- Homologous match to J4_5J7L_027
- Geometric discrepancy: 0.1084
- The information below is about J4_5J7L_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6HRM|1|1|C|3791
6HRM|1|1|G|3792
6HRM|1|1|A|3793
6HRM|1|1|A|3794
6HRM|1|1|G|3795
*
6HRM|1|1|U|3849
6HRM|1|1|U|3850
6HRM|1|1|G|3851
6HRM|1|1|A|3852
6HRM|1|1|C|3853
*
6HRM|1|1|G|3876
6HRM|1|1|G|3877
6HRM|1|1|U|3878
*
6HRM|1|1|A|3887
6HRM|1|1|G|3888
6HRM|1|1|G|3889
Current chains
- Chain 1
- stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA,stapled 16S-23S rRNA
Nearby chains
- Chain O
- 50S ribosomal protein L18
- Chain W
- 50S ribosomal protein L27
- Chain c
- 50S ribosomal protein L33
- Chain e
- 50S ribosomal protein L35
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