J4_6I7O_003
3D structure
- PDB id
- 6I7O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.3 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 6I7O|1|2b|A|359
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6I7O_003 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.1077
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6I7O|1|2b|C|99
6I7O|1|2b|A|100
6I7O|1|2b|U|101
6I7O|1|2b|U|102
6I7O|1|2b|A|103
6I7O|1|2b|A|104
6I7O|1|2b|A|105
6I7O|1|2b|U|106
6I7O|1|2b|C|107
*
6I7O|1|2b|G|307
6I7O|1|2b|C|308
6I7O|1|2b|C|309
*
6I7O|1|2b|G|357
6I7O|1|2b|U|358
6I7O|1|2b|A|359
6I7O|1|2b|A|360
6I7O|1|2b|C|361
*
6I7O|1|2b|G|383
6I7O|1|2b|G|384
Current chains
- Chain 2b
- 18S ribosomal RNA
Nearby chains
- Chain Sb
- 40S ribosomal protein S4-A
- Chain Vb
- 40S ribosomal protein S8-A
- Chain Xb
- 40S ribosomal protein S11-A
- Chain cb
- 40S ribosomal protein S23-A
Coloring options: