J4_6IP5_016
3D structure
- PDB id
- 6IP5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUGAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 6IP5|1|2m|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6IP5_016 not in the Motif Atlas
- Homologous match to J4_8CRE_021
- Geometric discrepancy: 0.1965
- The information below is about J4_8CRE_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6IP5|1|2m|C|98
6IP5|1|2m|A|99
6IP5|1|2m|U|100
6IP5|1|2m|U|101
6IP5|1|2m|A|102
6IP5|1|2m|A|103
6IP5|1|2m|A|104
6IP5|1|2m|U|105
6IP5|1|2m|C|106
*
6IP5|1|2m|G|355
6IP5|1|2m|C|356
6IP5|1|2m|C|357
*
6IP5|1|2m|G|405
6IP5|1|2m|U|406
6IP5|1|2m|G|407
6IP5|1|2m|A|408
6IP5|1|2m|C|409
*
6IP5|1|2m|G|431
6IP5|1|2m|G|432
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 2q
- 40S ribosomal protein S4, X isoform
- Chain 2t
- 40S ribosomal protein S8
- Chain 2v
- 40S ribosomal protein S11
- Chain 3B
- 40S ribosomal protein S23
Coloring options: