J4_6IP6_012
3D structure
- PDB id
- 6IP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 6IP6|1|2m|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6IP6_012 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1354
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
6IP6|1|2m|A|671
6IP6|1|2m|A|672
6IP6|1|2m|G|673
*
6IP6|1|2m|C|1032
6IP6|1|2m|G|1033
6IP6|1|2m|A|1034
6IP6|1|2m|A|1035
6IP6|1|2m|A|1036
6IP6|1|2m|G|1037
*
6IP6|1|2m|C|1078
6IP6|1|2m|C|1079
6IP6|1|2m|A|1080
6IP6|1|2m|U|1081
6IP6|1|2m|A|1082
6IP6|1|2m|A|1083
6IP6|1|2m|A|1084
6IP6|1|2m|C|1085
6IP6|1|2m|G|1086
6IP6|1|2m|A|1087
6IP6|1|2m|U|1088
6IP6|1|2m|G|1089
*
6IP6|1|2m|U|1160
6IP6|1|2m|U|1161
Current chains
- Chain 2m
- 18S ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2h
- 60S ribosomal protein L41
- Chain 2j
- 60S ribosomal protein L37a
- Chain 2v
- 40S ribosomal protein S11
- Chain 3B
- 40S ribosomal protein S23
- Chain 3C
- 40S ribosomal protein S26
- Chain 3K
- 40S ribosomal protein S13
- Chain 3L
- 40S ribosomal protein S14
- Chain 3M
- 40S ribosomal protein S15a
Coloring options: