3D structure

PDB id
6LKQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Structural Basis for Inhibition of Ribosomal Translocation by Viomycin
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
AACUG*CACAG*UGAC*GUAAU
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6LKQ_011 not in the Motif Atlas
Homologous match to J4_5J7L_025
Geometric discrepancy: 0.076
The information below is about J4_5J7L_025
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61477.5
Basepair signature
cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Number of instances in this motif group
4

Unit IDs

6LKQ|1|t|A|1772
6LKQ|1|t|A|1773
6LKQ|1|t|C|1774
6LKQ|1|t|U|1775
6LKQ|1|t|G|1776
*
6LKQ|1|t|C|1788
6LKQ|1|t|A|1789
6LKQ|1|t|C|1790
6LKQ|1|t|A|1791
6LKQ|1|t|G|1792
*
6LKQ|1|t|U|1827
6LKQ|1|t|G|1828
6LKQ|1|t|A|1829
6LKQ|1|t|C|1830
*
6LKQ|1|t|G|1975
6LKQ|1|t|U|1976
6LKQ|1|t|A|1977
6LKQ|1|t|A|1978
6LKQ|1|t|U|1979

Current chains

Chain t
23S ribosomal RNA

Nearby chains

Chain U
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3175 s
Application loaded.